PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca8999.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 232aa    MW: 24302.5 Da    PI: 7.2336
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca8999.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601315.2e-41301301100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+ dC++apyf ++q + +fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l++
  Dca8999.1  30 PCGACKFLRRKCVMDCIFAPYFDSDQgSGHFAAVHKVFGASNVSKLLQHMPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQA 129
                7***********************99889*******************************************************************9998 PP

     DUF260 100 e 100
                +
  Dca8999.1 130 H 130
                6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.12129131IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-4030128IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCANPSSSG GGGGGSGGSS SGGGGGGGGP CGACKFLRRK CVMDCIFAPY FDSDQGSGHF  60
AAVHKVFGAS NVSKLLQHMP VHKRLDAVVT ICYEAQARLR DPVYGCVAHI FALQQQVVNL  120
QAELSYLQAH LSSLEVPTPP PPPPQPLMPP PALSISDLPS ASTVPATYDL SSLYDPMVQP  180
SWIMQQQQQQ QRGPMDLPQF GSMVNTGPTH GSTSSGDFQA LARELLHKHG SS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692269.11e-102PREDICTED: LOB domain-containing protein 18
SwissprotO221311e-72LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0J8BJ821e-102A0A0J8BJ82_BETVU; Uncharacterized protein
STRINGVIT_15s0048g00830.t012e-91(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.14e-72LBD family protein